The Red and Black at the University of Georgia has switched from College Publisher to a WordPress system, hosted by CoPress. Along with the new CMS, the R&B freshened up their design. Chelsea Cook and Daniel Burnett talked about the switch in this article.
The Chronicle at Quinnipiac University has also moved to WordPress through CoPress.
And the College Heights Herald at Western Kentucky has tweaked their design from Fall ’09. Here’s the earlier version (note the new version has more navigation links above and below the flag):